Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sync_2096Conserved hypothetical protein. (138 aa)    
Predicted Functional Partners:
sync_2097
Ribonuclease P protein component (RNaseP protein) (RNaseP protein) (Protein C5); RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
       0.812
sync_2095
Inner membrane protein oxaA; Identified by match to protein family HMM PF02096.
 
     0.785
sync_0241
Rubredoxin; Identified by match to protein family HMM PF00301.
  
   
 0.775
psb27
Possible photosystem II Psb27 protein; Plays a role in the repair and/or biogenesis of the calcium- manganese-oxide cluster on the lumenal face of the thylakoid membrane. Its presence in a photosystem II (PSII) preparation prevents binding of some small extrinsic subunits and thus assembly of calcium-manganese- oxide cluster.
  
   
 0.773
sync_1039
PsbP; Identified by match to protein family HMM PF01789.
  
     0.772
sync_1331
Conserved hypothetical protein; Identified by similarity to GB:CAE20920.1.
  
     0.772
psbW
Photosystem II reaction center protein PsbW; Identified by match to protein family HMM PF03912; match to protein family HMM TIGR03047; Belongs to the Psb28 family.
  
   
 0.772
sync_1629
Conserved hypothetical protein; Identified by similarity to GB:CAE07548.1.
  
     0.772
psbO
Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716.
  
     0.770
sync_1994
Identified by match to protein family HMM PF06485.
  
     0.770
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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