STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_2096Conserved hypothetical protein. (138 aa)    
Predicted Functional Partners:
sync_2097
Ribonuclease P protein component (RNaseP protein) (RNaseP protein) (Protein C5); RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
       0.815
sync_2095
Inner membrane protein oxaA; Identified by match to protein family HMM PF02096.
 
     0.787
sync_1039
PsbP; Identified by match to protein family HMM PF01789.
  
     0.772
sync_1331
Conserved hypothetical protein; Identified by similarity to GB:CAE20920.1.
  
     0.772
sync_1629
Conserved hypothetical protein; Identified by similarity to GB:CAE07548.1.
  
     0.772
psbO
Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716.
  
     0.770
sync_1994
Identified by match to protein family HMM PF06485.
  
     0.770
psb27
Possible photosystem II Psb27 protein; Plays a role in the repair and/or biogenesis of the calcium- manganese-oxide cluster on the lumenal face of the thylakoid membrane. Its presence in a photosystem II (PSII) preparation prevents binding of some small extrinsic subunits and thus assembly of calcium-manganese- oxide cluster.
  
     0.770
psbW
Photosystem II reaction center protein PsbW; Identified by match to protein family HMM PF03912; match to protein family HMM TIGR03047; Belongs to the Psb28 family.
  
     0.769
sync_1432
Uncharacterized membrane protein.
  
     0.768
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.