STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhaTPermease of the drug/metabolite transporter, DMT superfamily protein; Identified by match to protein family HMM PF00892. (320 aa)    
Predicted Functional Partners:
sync_2103
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
  
  
 0.791
sync_1274
Uncharacterized protein.
  
     0.659
sync_2117
Conserved hypothetical protein; Identified by similarity to GB:CAE21526.1.
  
     0.651
sync_2104
Dolichyl-phosphate-mannose-protein mannosyltransferase; Identified by match to protein family HMM PF02366.
  
    0.637
sync_1331
Conserved hypothetical protein; Identified by similarity to GB:CAE20920.1.
  
     0.617
sync_0057
Putative photosystem I assembly related protein Ycf37; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
     0.606
aroH
Chorismate mutase; Catalyzes the Claisen rearrangement of chorismate to prephenate. Probably involved in the aromatic amino acid biosynthesis.
       0.601
sppA
Signal peptide peptidase SppA (protease IV); Identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706.
       0.601
sync_2455
PRC-barrel domain protein; Identified by match to protein family HMM PF05239.
  
     0.594
sync_0597
Possible cobalt transport protein; Identified by match to protein family HMM PF02361.
 
    0.568
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.