STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_2103Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534. (370 aa)    
Predicted Functional Partners:
rhaT
Permease of the drug/metabolite transporter, DMT superfamily protein; Identified by match to protein family HMM PF00892.
  
  
 0.791
sync_2104
Dolichyl-phosphate-mannose-protein mannosyltransferase; Identified by match to protein family HMM PF02366.
     
 0.601
sppA
Signal peptide peptidase SppA (protease IV); Identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706.
       0.554
aroH
Chorismate mutase; Catalyzes the Claisen rearrangement of chorismate to prephenate. Probably involved in the aromatic amino acid biosynthesis.
       0.549
sync_0156
Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.
   
 
 0.532
rfaG
Glycosyl transferases group 1; Identified by match to protein family HMM PF00534.
  
     0.527
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.506
sync_0150
Identified by match to protein family HMM PF02706.
 
  
 0.460
sync_0890
Conserved hypothetical protein.
  
     0.440
sync_1909
Uncharacterized ycii family conserved protein; Identified by match to protein family HMM PF03795.
  
     0.403
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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