STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_2117Conserved hypothetical protein; Identified by similarity to GB:CAE21526.1. (214 aa)    
Predicted Functional Partners:
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
  
    0.918
secE
Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
    0.874
sync_2118
Conserved hypothetical protein TIGR00303; Identified by match to protein family HMM PF02277; match to protein family HMM TIGR00303; Belongs to the UPF0284 family.
 
     0.832
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
 
    0.793
sync_1911
Conserved hypothetical protein.
  
     0.774
sync_2116
Conserved hypothetical protein.
       0.773
sync_2455
PRC-barrel domain protein; Identified by match to protein family HMM PF05239.
  
     0.773
sync_2286
Ycf65 homolog; Probably a ribosomal protein or a ribosome-associated protein; Belongs to the chloroplast-specific ribosomal protein cS23 family.
  
     0.771
sync_1203
Uncharacterized membrane protein.
  
     0.769
sync_1331
Conserved hypothetical protein; Identified by similarity to GB:CAE20920.1.
  
     0.768
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.