STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OxidoreductaseOxidoreductase, Aldo/keto reductase family; Identified by match to protein family HMM PF00037; match to protein family HMM PF00248. (375 aa)    
Predicted Functional Partners:
sync_2121
Conserved hypothetical protein; Identified by similarity to GB:CAE08381.1; match to protein family HMM PF02577.
       0.750
ribE
Riboflavin synthase, alpha subunit; Identified by match to protein family HMM PF00677; match to protein family HMM TIGR00187.
       0.562
sync_0454
Identified by match to protein family HMM PF00733; match to protein family HMM TIGR00268.
 
    0.538
sync_0783
Putative circadian phase modifier CpmA homolog.
 
    0.488
sync_2051
Conserved hypothetical protein TIGR00299; Identified by match to protein family HMM PF01969; match to protein family HMM TIGR00299; Belongs to the LarC family.
 
    0.483
sync_2587
Conserved hypothetical protein; Identified by similarity to GB:CAE22160.1; Belongs to the UPF0367 family.
  
     0.460
rpoZ
Putative DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.411
sync_0594
Conserved hypothetical protein.
  
     0.405
secE
Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.404
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.