Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| psaD | psbO | sync_0463 | sync_0353 | Photosystem I reaction center subunit II; Identified by match to protein family HMM PF02531. | Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716. | 0.865 |
| psaD | sync_1039 | sync_0463 | sync_1039 | Photosystem I reaction center subunit II; Identified by match to protein family HMM PF02531. | PsbP; Identified by match to protein family HMM PF01789. | 0.777 |
| psaD | sync_1271 | sync_0463 | sync_1271 | Photosystem I reaction center subunit II; Identified by match to protein family HMM PF02531. | Cyanobacteria-specific chaperone containing dnaj domain fused to a membrane domain. | 0.433 |
| psaD | sync_1994 | sync_0463 | sync_1994 | Photosystem I reaction center subunit II; Identified by match to protein family HMM PF02531. | Identified by match to protein family HMM PF06485. | 0.765 |
| psaD | sync_2096 | sync_0463 | sync_2096 | Photosystem I reaction center subunit II; Identified by match to protein family HMM PF02531. | Conserved hypothetical protein. | 0.754 |
| psaD | sync_2150 | sync_0463 | sync_2150 | Photosystem I reaction center subunit II; Identified by match to protein family HMM PF02531. | Conserved hypothetical protein. | 0.736 |
| psaD | sync_2197 | sync_0463 | sync_2197 | Photosystem I reaction center subunit II; Identified by match to protein family HMM PF02531. | Conserved hypothetical protein; Identified by similarity to GB:CAE20653.1. | 0.665 |
| psaD | sync_2286 | sync_0463 | sync_2286 | Photosystem I reaction center subunit II; Identified by match to protein family HMM PF02531. | Ycf65 homolog; Probably a ribosomal protein or a ribosome-associated protein; Belongs to the chloroplast-specific ribosomal protein cS23 family. | 0.710 |
| psaD | sync_2925 | sync_0463 | sync_2925 | Photosystem I reaction center subunit II; Identified by match to protein family HMM PF02531. | Uncharacterized membrane protein. | 0.751 |
| psaD | thf1 | sync_0463 | sync_1419 | Photosystem I reaction center subunit II; Identified by match to protein family HMM PF02531. | Uncharacterized protein; May be involved in photosynthetic membrane biogenesis. | 0.737 |
| psbO | psaD | sync_0353 | sync_0463 | Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716. | Photosystem I reaction center subunit II; Identified by match to protein family HMM PF02531. | 0.865 |
| psbO | sync_1039 | sync_0353 | sync_1039 | Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716. | PsbP; Identified by match to protein family HMM PF01789. | 0.983 |
| psbO | sync_1994 | sync_0353 | sync_1994 | Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716. | Identified by match to protein family HMM PF06485. | 0.773 |
| psbO | sync_2096 | sync_0353 | sync_2096 | Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716. | Conserved hypothetical protein. | 0.770 |
| psbO | sync_2150 | sync_0353 | sync_2150 | Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716. | Conserved hypothetical protein. | 0.749 |
| psbO | sync_2197 | sync_0353 | sync_2197 | Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716. | Conserved hypothetical protein; Identified by similarity to GB:CAE20653.1. | 0.421 |
| psbO | sync_2286 | sync_0353 | sync_2286 | Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716. | Ycf65 homolog; Probably a ribosomal protein or a ribosome-associated protein; Belongs to the chloroplast-specific ribosomal protein cS23 family. | 0.715 |
| psbO | sync_2925 | sync_0353 | sync_2925 | Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716. | Uncharacterized membrane protein. | 0.768 |
| psbO | thf1 | sync_0353 | sync_1419 | Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716. | Uncharacterized protein; May be involved in photosynthetic membrane biogenesis. | 0.787 |
| sync_1039 | psaD | sync_1039 | sync_0463 | PsbP; Identified by match to protein family HMM PF01789. | Photosystem I reaction center subunit II; Identified by match to protein family HMM PF02531. | 0.777 |
page 1 of 6