Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sync_2160Protein of unknown function (DUF1643) family protein; Identified by match to protein family HMM PF07799. (221 aa)    
Predicted Functional Partners:
sync_2162
Transporter, monovalent cation:proton antiporter-2 (CPA2) family protein; Identified by match to protein family HMM PF00999.
       0.799
sync_2161
Conserved hypothetical protein.
       0.781
sync_2159
UDP-N-acetylglucosamine 2-epimerase; Identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
       0.773
sync_2158
Twitching mobility protein PilT; Identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420.
       0.541
sync_0230
Selenide,water dikinase; Identified by match to protein family HMM PF02769.
  
     0.480
sat
Sulfate adenylyltransferase; Identified by match to protein family HMM PF01747; match to protein family HMM TIGR00339.
  
     0.472
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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