sync_2195 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

sync_2195

Putative GPH family sugar transporter; Identified by match to protein family HMM PF07690. (469 aa)

Predicted Functional Partners:

sync_2196

0.746

sync_2197

0.746

treX

0.593

sync_2198

0.561

plsY

0.545

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
plsY	sync_2195	sync_2199	sync_2195	Conserved hypothetical protein TIGR00023; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.	Putative GPH family sugar transporter; Identified by match to protein family HMM PF07690.	0.545
plsY	sync_2196	sync_2199	sync_2196	Conserved hypothetical protein TIGR00023; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.	Possible transporter, membrane component; Identified by match to protein family HMM PF02405.	0.583
plsY	sync_2197	sync_2199	sync_2197	Conserved hypothetical protein TIGR00023; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.	Conserved hypothetical protein; Identified by similarity to GB:CAE20653.1.	0.583
plsY	sync_2198	sync_2199	sync_2198	Conserved hypothetical protein TIGR00023; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.	Uncharacterized protein.	0.812
plsY	treX	sync_2199	sync_2193	Conserved hypothetical protein TIGR00023; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.	Glycogen debranching enzyme; Identified by match to protein family HMM PF00128; match to protein family HMM PF02922; Belongs to the glycosyl hydrolase 13 family.	0.435
sync_2195	plsY	sync_2195	sync_2199	Putative GPH family sugar transporter; Identified by match to protein family HMM PF07690.	Conserved hypothetical protein TIGR00023; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.	0.545
sync_2195	sync_2196	sync_2195	sync_2196	Putative GPH family sugar transporter; Identified by match to protein family HMM PF07690.	Possible transporter, membrane component; Identified by match to protein family HMM PF02405.	0.746
sync_2195	sync_2197	sync_2195	sync_2197	Putative GPH family sugar transporter; Identified by match to protein family HMM PF07690.	Conserved hypothetical protein; Identified by similarity to GB:CAE20653.1.	0.746
sync_2195	sync_2198	sync_2195	sync_2198	Putative GPH family sugar transporter; Identified by match to protein family HMM PF07690.	Uncharacterized protein.	0.561
sync_2195	treX	sync_2195	sync_2193	Putative GPH family sugar transporter; Identified by match to protein family HMM PF07690.	Glycogen debranching enzyme; Identified by match to protein family HMM PF00128; match to protein family HMM PF02922; Belongs to the glycosyl hydrolase 13 family.	0.593
sync_2196	plsY	sync_2196	sync_2199	Possible transporter, membrane component; Identified by match to protein family HMM PF02405.	Conserved hypothetical protein TIGR00023; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.	0.583
sync_2196	sync_2195	sync_2196	sync_2195	Possible transporter, membrane component; Identified by match to protein family HMM PF02405.	Putative GPH family sugar transporter; Identified by match to protein family HMM PF07690.	0.746
sync_2196	sync_2197	sync_2196	sync_2197	Possible transporter, membrane component; Identified by match to protein family HMM PF02405.	Conserved hypothetical protein; Identified by similarity to GB:CAE20653.1.	0.812
sync_2196	sync_2198	sync_2196	sync_2198	Possible transporter, membrane component; Identified by match to protein family HMM PF02405.	Uncharacterized protein.	0.581
sync_2196	treX	sync_2196	sync_2193	Possible transporter, membrane component; Identified by match to protein family HMM PF02405.	Glycogen debranching enzyme; Identified by match to protein family HMM PF00128; match to protein family HMM PF02922; Belongs to the glycosyl hydrolase 13 family.	0.555
sync_2197	plsY	sync_2197	sync_2199	Conserved hypothetical protein; Identified by similarity to GB:CAE20653.1.	Conserved hypothetical protein TIGR00023; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.	0.583
sync_2197	sync_2195	sync_2197	sync_2195	Conserved hypothetical protein; Identified by similarity to GB:CAE20653.1.	Putative GPH family sugar transporter; Identified by match to protein family HMM PF07690.	0.746
sync_2197	sync_2196	sync_2197	sync_2196	Conserved hypothetical protein; Identified by similarity to GB:CAE20653.1.	Possible transporter, membrane component; Identified by match to protein family HMM PF02405.	0.812
sync_2197	sync_2198	sync_2197	sync_2198	Conserved hypothetical protein; Identified by similarity to GB:CAE20653.1.	Uncharacterized protein.	0.754
sync_2197	treX	sync_2197	sync_2193	Conserved hypothetical protein; Identified by similarity to GB:CAE20653.1.	Glycogen debranching enzyme; Identified by match to protein family HMM PF00128; match to protein family HMM PF02922; Belongs to the glycosyl hydrolase 13 family.	0.554