Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sync_2196Possible transporter, membrane component; Identified by match to protein family HMM PF02405. (248 aa)    
Predicted Functional Partners:
mkl
Possible ABC transporter, ATP-binding component; Identified by match to protein family HMM PF00005.
 
 0.998
sync_0247
Possible ABC transporter.
 
 0.991
sync_1635
STAS domain protein; Identified by match to protein family HMM PF01740; Belongs to the anti-sigma-factor antagonist family.
   
 
 0.865
sync_2197
Conserved hypothetical protein; Identified by similarity to GB:CAE20653.1.
       0.812
sync_2195
Putative GPH family sugar transporter; Identified by match to protein family HMM PF07690.
       0.746
sync_2215
Membrane protein, OMP85 family protein; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244.
 
     0.656
sync_1289
Putative membrane protein, YjgP/YjgQ family protein; Identified by match to protein family HMM PF03739.
  
  
 0.585
plsY
Conserved hypothetical protein TIGR00023; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.
       0.583
sync_2198
Uncharacterized protein.
       0.581
treX
Glycogen debranching enzyme; Identified by match to protein family HMM PF00128; match to protein family HMM PF02922; Belongs to the glycosyl hydrolase 13 family.
       0.555
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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