sync_2286 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sync_2286

Ycf65 homolog; Probably a ribosomal protein or a ribosome-associated protein; Belongs to the chloroplast-specific ribosomal protein cS23 family. (126 aa)

Predicted Functional Partners:

sync_1911

0.772

sync_2117

0.771

sync_0196

0.767

sync_1152

0.763

sync_1555

0.761

sync_1271

0.760

sync_2455

0.759

sync_1039

0.756

sync_2096

0.754

sync_2150

0.754

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
sync_0196	sync_1039	Conserved hypothetical protein; Identified by similarity to GB:CAE22124.1.	PsbP; Identified by match to protein family HMM PF01789.	0.573
sync_0196	sync_1152	Conserved hypothetical protein; Identified by similarity to GB:CAE22124.1.	Conserved hypothetical protein; Identified by similarity to GB:CAE07426.1.	0.760
sync_0196	sync_1271	Conserved hypothetical protein; Identified by similarity to GB:CAE22124.1.	Cyanobacteria-specific chaperone containing dnaj domain fused to a membrane domain.	0.773
sync_0196	sync_1555	Conserved hypothetical protein; Identified by similarity to GB:CAE22124.1.	Conserved hypothetical protein; Identified by similarity to GB:CAE20563.1; match to protein family HMM PF07082.	0.485
sync_0196	sync_1911	Conserved hypothetical protein; Identified by similarity to GB:CAE22124.1.	Conserved hypothetical protein.	0.775
sync_0196	sync_2096	Conserved hypothetical protein; Identified by similarity to GB:CAE22124.1.	Conserved hypothetical protein.	0.693
sync_0196	sync_2117	Conserved hypothetical protein; Identified by similarity to GB:CAE22124.1.	Conserved hypothetical protein; Identified by similarity to GB:CAE21526.1.	0.762
sync_0196	sync_2150	Conserved hypothetical protein; Identified by similarity to GB:CAE22124.1.	Conserved hypothetical protein.	0.655
sync_0196	sync_2286	Conserved hypothetical protein; Identified by similarity to GB:CAE22124.1.	Ycf65 homolog; Probably a ribosomal protein or a ribosome-associated protein; Belongs to the chloroplast-specific ribosomal protein cS23 family.	0.767
sync_0196	sync_2455	Conserved hypothetical protein; Identified by similarity to GB:CAE22124.1.	PRC-barrel domain protein; Identified by match to protein family HMM PF05239.	0.620
sync_1039	sync_0196	PsbP; Identified by match to protein family HMM PF01789.	Conserved hypothetical protein; Identified by similarity to GB:CAE22124.1.	0.573
sync_1039	sync_1152	PsbP; Identified by match to protein family HMM PF01789.	Conserved hypothetical protein; Identified by similarity to GB:CAE07426.1.	0.635
sync_1039	sync_1271	PsbP; Identified by match to protein family HMM PF01789.	Cyanobacteria-specific chaperone containing dnaj domain fused to a membrane domain.	0.740
sync_1039	sync_1555	PsbP; Identified by match to protein family HMM PF01789.	Conserved hypothetical protein; Identified by similarity to GB:CAE20563.1; match to protein family HMM PF07082.	0.769
sync_1039	sync_1911	PsbP; Identified by match to protein family HMM PF01789.	Conserved hypothetical protein.	0.687
sync_1039	sync_2096	PsbP; Identified by match to protein family HMM PF01789.	Conserved hypothetical protein.	0.772
sync_1039	sync_2117	PsbP; Identified by match to protein family HMM PF01789.	Conserved hypothetical protein; Identified by similarity to GB:CAE21526.1.	0.747
sync_1039	sync_2150	PsbP; Identified by match to protein family HMM PF01789.	Conserved hypothetical protein.	0.748
sync_1039	sync_2286	PsbP; Identified by match to protein family HMM PF01789.	Ycf65 homolog; Probably a ribosomal protein or a ribosome-associated protein; Belongs to the chloroplast-specific ribosomal protein cS23 family.	0.756
sync_1039	sync_2455	PsbP; Identified by match to protein family HMM PF01789.	PRC-barrel domain protein; Identified by match to protein family HMM PF05239.	0.743