STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_2347Oxidoreductase, aldo/keto reductase family protein; Identified by match to protein family HMM PF00248. (397 aa)    
Predicted Functional Partners:
sync_2349
Identified by match to protein family HMM PF06868.
 
     0.736
sync_2348
3Fe-4S ferredoxin.
       0.733
sync_2350
Conserved hypothetical protein.
 
     0.712
sync_2351
HEAT-like repeat containing protein; Identified by match to protein family HMM PF02985; match to protein family HMM PF03130.
 
     0.623
sync_0454
Identified by match to protein family HMM PF00733; match to protein family HMM TIGR00268.
 
    0.542
sync_0783
Putative circadian phase modifier CpmA homolog.
 
    0.516
sync_2051
Conserved hypothetical protein TIGR00299; Identified by match to protein family HMM PF01969; match to protein family HMM TIGR00299; Belongs to the LarC family.
 
    0.504
sync_2355
Possible high light inducible protein.
 
     0.449
sync_2352
Conserved hypothetical protein.
       0.430
sync_2353
Sodium:solute symporter family, possible glucose transporter; Identified by match to protein family HMM PF00474; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.419
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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