sync_2347 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sync_2347

Oxidoreductase, aldo/keto reductase family protein; Identified by match to protein family HMM PF00248. (397 aa)

Predicted Functional Partners:

sync_2349

0.729

sync_2348

0.725

sync_2350

0.712

sync_2351

0.576

sync_0454

0.539

sync_0783

0.514

sync_2051

0.505

sync_2355

0.449

sync_2352

0.430

sync_2353

0.414

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
sync_0454	sync_0783	Identified by match to protein family HMM PF00733; match to protein family HMM TIGR00268.	Putative circadian phase modifier CpmA homolog.	0.971
sync_0454	sync_2051	Identified by match to protein family HMM PF00733; match to protein family HMM TIGR00268.	Conserved hypothetical protein TIGR00299; Identified by match to protein family HMM PF01969; match to protein family HMM TIGR00299; Belongs to the LarC family.	0.951
sync_0454	sync_2347	Identified by match to protein family HMM PF00733; match to protein family HMM TIGR00268.	Oxidoreductase, aldo/keto reductase family protein; Identified by match to protein family HMM PF00248.	0.539
sync_0783	sync_0454	Putative circadian phase modifier CpmA homolog.	Identified by match to protein family HMM PF00733; match to protein family HMM TIGR00268.	0.971
sync_0783	sync_2051	Putative circadian phase modifier CpmA homolog.	Conserved hypothetical protein TIGR00299; Identified by match to protein family HMM PF01969; match to protein family HMM TIGR00299; Belongs to the LarC family.	0.895
sync_0783	sync_2347	Putative circadian phase modifier CpmA homolog.	Oxidoreductase, aldo/keto reductase family protein; Identified by match to protein family HMM PF00248.	0.514
sync_2051	sync_0454	Conserved hypothetical protein TIGR00299; Identified by match to protein family HMM PF01969; match to protein family HMM TIGR00299; Belongs to the LarC family.	Identified by match to protein family HMM PF00733; match to protein family HMM TIGR00268.	0.951
sync_2051	sync_0783	Conserved hypothetical protein TIGR00299; Identified by match to protein family HMM PF01969; match to protein family HMM TIGR00299; Belongs to the LarC family.	Putative circadian phase modifier CpmA homolog.	0.895
sync_2051	sync_2347	Conserved hypothetical protein TIGR00299; Identified by match to protein family HMM PF01969; match to protein family HMM TIGR00299; Belongs to the LarC family.	Oxidoreductase, aldo/keto reductase family protein; Identified by match to protein family HMM PF00248.	0.505
sync_2347	sync_0454	Oxidoreductase, aldo/keto reductase family protein; Identified by match to protein family HMM PF00248.	Identified by match to protein family HMM PF00733; match to protein family HMM TIGR00268.	0.539
sync_2347	sync_0783	Oxidoreductase, aldo/keto reductase family protein; Identified by match to protein family HMM PF00248.	Putative circadian phase modifier CpmA homolog.	0.514
sync_2347	sync_2051	Oxidoreductase, aldo/keto reductase family protein; Identified by match to protein family HMM PF00248.	Conserved hypothetical protein TIGR00299; Identified by match to protein family HMM PF01969; match to protein family HMM TIGR00299; Belongs to the LarC family.	0.505
sync_2347	sync_2348	Oxidoreductase, aldo/keto reductase family protein; Identified by match to protein family HMM PF00248.	3Fe-4S ferredoxin.	0.725
sync_2347	sync_2349	Oxidoreductase, aldo/keto reductase family protein; Identified by match to protein family HMM PF00248.	Identified by match to protein family HMM PF06868.	0.729
sync_2347	sync_2350	Oxidoreductase, aldo/keto reductase family protein; Identified by match to protein family HMM PF00248.	Conserved hypothetical protein.	0.712
sync_2347	sync_2351	Oxidoreductase, aldo/keto reductase family protein; Identified by match to protein family HMM PF00248.	HEAT-like repeat containing protein; Identified by match to protein family HMM PF02985; match to protein family HMM PF03130.	0.576
sync_2347	sync_2352	Oxidoreductase, aldo/keto reductase family protein; Identified by match to protein family HMM PF00248.	Conserved hypothetical protein.	0.430
sync_2347	sync_2353	Oxidoreductase, aldo/keto reductase family protein; Identified by match to protein family HMM PF00248.	Sodium:solute symporter family, possible glucose transporter; Identified by match to protein family HMM PF00474; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.414
sync_2347	sync_2355	Oxidoreductase, aldo/keto reductase family protein; Identified by match to protein family HMM PF00248.	Possible high light inducible protein.	0.449
sync_2348	sync_2347	3Fe-4S ferredoxin.	Oxidoreductase, aldo/keto reductase family protein; Identified by match to protein family HMM PF00248.	0.725