STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_23483Fe-4S ferredoxin. (134 aa)    
Predicted Functional Partners:
sync_2349
Identified by match to protein family HMM PF06868.
 
     0.872
sync_1407
Conserved hypothetical protein; Identified by similarity to GB:CAE20864.1.
  
     0.773
sync_1408
Conserved hypothetical protein; Identified by similarity to GB:CAE07804.1.
  
     0.771
sync_1581
Identified by match to protein family HMM PF05419.
  
     0.771
sync_1201
Conserved hypothetical protein; Identified by match to protein family HMM PF06799.
  
     0.763
sync_2028
Conserved hypothetical protein; Identified by similarity to GB:CAE08294.1.
  
     0.748
sync_2460
Conserved hypothetical protein; Identified by similarity to GB:CAE06850.1; match to protein family HMM PF02325.
  
     0.743
sync_2096
Conserved hypothetical protein.
  
     0.735
sync_1994
Identified by match to protein family HMM PF06485.
  
     0.728
sync_2347
Oxidoreductase, aldo/keto reductase family protein; Identified by match to protein family HMM PF00248.
       0.725
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.