Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
rimP | sync_2366 | sync_2370 | sync_2366 | DUF150; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | Possible ABC transporter, solute binding protein. | 0.423 |
rimP | sync_2367 | sync_2370 | sync_2367 | DUF150; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | Hypothetical protein; Identified by Glimmer2; putative. | 0.485 |
rimP | sync_2368 | sync_2370 | sync_2368 | DUF150; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | Arylsulfatase regulator; Identified by match to protein family HMM PF04055. | 0.485 |
rimP | sync_2369 | sync_2370 | sync_2369 | DUF150; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | Lipoprotein, putative. | 0.516 |
sync_0813 | sync_1509 | sync_0813 | sync_1509 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.430 |
sync_0813 | sync_2366 | sync_0813 | sync_2366 | Conserved hypothetical protein. | Possible ABC transporter, solute binding protein. | 0.591 |
sync_0813 | sync_2368 | sync_0813 | sync_2368 | Conserved hypothetical protein. | Arylsulfatase regulator; Identified by match to protein family HMM PF04055. | 0.650 |
sync_0813 | sync_2464 | sync_0813 | sync_2464 | Conserved hypothetical protein. | Lipoprotein, putative. | 0.574 |
sync_0813 | sync_2811 | sync_0813 | sync_2811 | Conserved hypothetical protein. | Hypothetical protein; Identified by Glimmer2; putative. | 0.693 |
sync_1509 | sync_0813 | sync_1509 | sync_0813 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.430 |
sync_1509 | sync_2368 | sync_1509 | sync_2368 | Conserved hypothetical protein. | Arylsulfatase regulator; Identified by match to protein family HMM PF04055. | 0.482 |
sync_1509 | sync_2464 | sync_1509 | sync_2464 | Conserved hypothetical protein. | Lipoprotein, putative. | 0.738 |
sync_1509 | sync_2811 | sync_1509 | sync_2811 | Conserved hypothetical protein. | Hypothetical protein; Identified by Glimmer2; putative. | 0.593 |
sync_2365 | sync_2366 | sync_2365 | sync_2366 | Hypothetical protein; Identified by Glimmer2; putative. | Possible ABC transporter, solute binding protein. | 0.541 |
sync_2365 | sync_2367 | sync_2365 | sync_2367 | Hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.455 |
sync_2365 | sync_2368 | sync_2365 | sync_2368 | Hypothetical protein; Identified by Glimmer2; putative. | Arylsulfatase regulator; Identified by match to protein family HMM PF04055. | 0.455 |
sync_2365 | sync_2369 | sync_2365 | sync_2369 | Hypothetical protein; Identified by Glimmer2; putative. | Lipoprotein, putative. | 0.430 |
sync_2366 | rimP | sync_2366 | sync_2370 | Possible ABC transporter, solute binding protein. | DUF150; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.423 |
sync_2366 | sync_0813 | sync_2366 | sync_0813 | Possible ABC transporter, solute binding protein. | Conserved hypothetical protein. | 0.591 |
sync_2366 | sync_2365 | sync_2366 | sync_2365 | Possible ABC transporter, solute binding protein. | Hypothetical protein; Identified by Glimmer2; putative. | 0.541 |
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