fabG-2 protein (Synechococcus sp. CC9311) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

fabG-2

2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase(2,5-ddol dehydrogenase); Identified by match to protein family HMM PF00106. (258 aa)

Predicted Functional Partners:

sync_0156

0.957

sync_2383

0.528

fabD

0.503

sync_2381

0.485

sync_0154

0.484

sync_2830

0.417

sync_0387

0.407

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
fabD	fabG-2	sync_2600	sync_2382	Malonyl CoA-acyl carrier protein transacylase; Identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128.	2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase(2,5-ddol dehydrogenase); Identified by match to protein family HMM PF00106.	0.503
fabD	sync_0154	sync_2600	sync_0154	Malonyl CoA-acyl carrier protein transacylase; Identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128.	Membrane protein, putative.	0.759
fabD	sync_0156	sync_2600	sync_0156	Malonyl CoA-acyl carrier protein transacylase; Identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128.	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.999
fabG-2	fabD	sync_2382	sync_2600	2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase(2,5-ddol dehydrogenase); Identified by match to protein family HMM PF00106.	Malonyl CoA-acyl carrier protein transacylase; Identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128.	0.503
fabG-2	sync_0154	sync_2382	sync_0154	2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase(2,5-ddol dehydrogenase); Identified by match to protein family HMM PF00106.	Membrane protein, putative.	0.484
fabG-2	sync_0156	sync_2382	sync_0156	2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase(2,5-ddol dehydrogenase); Identified by match to protein family HMM PF00106.	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.957
fabG-2	sync_0387	sync_2382	sync_0387	2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase(2,5-ddol dehydrogenase); Identified by match to protein family HMM PF00106.	Ferredoxin-dependent glutamate synthase, Fd-GOGAT; Identified by match to protein family HMM PF00310; match to protein family HMM PF00478; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	0.407
fabG-2	sync_2381	sync_2382	sync_2381	2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase(2,5-ddol dehydrogenase); Identified by match to protein family HMM PF00106.	Conserved hypothetical protein.	0.485
fabG-2	sync_2383	sync_2382	sync_2383	2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase(2,5-ddol dehydrogenase); Identified by match to protein family HMM PF00106.	Hypothetical protein; Identified by Glimmer2; putative.	0.528
fabG-2	sync_2830	sync_2382	sync_2830	2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase(2,5-ddol dehydrogenase); Identified by match to protein family HMM PF00106.	Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106.	0.417
sync_0154	fabD	sync_0154	sync_2600	Membrane protein, putative.	Malonyl CoA-acyl carrier protein transacylase; Identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128.	0.759
sync_0154	fabG-2	sync_0154	sync_2382	Membrane protein, putative.	2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase(2,5-ddol dehydrogenase); Identified by match to protein family HMM PF00106.	0.484
sync_0154	sync_0156	sync_0154	sync_0156	Membrane protein, putative.	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.992
sync_0154	sync_0387	sync_0154	sync_0387	Membrane protein, putative.	Ferredoxin-dependent glutamate synthase, Fd-GOGAT; Identified by match to protein family HMM PF00310; match to protein family HMM PF00478; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	0.608
sync_0154	sync_2830	sync_0154	sync_2830	Membrane protein, putative.	Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106.	0.484
sync_0156	fabD	sync_0156	sync_2600	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Malonyl CoA-acyl carrier protein transacylase; Identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128.	0.999
sync_0156	fabG-2	sync_0156	sync_2382	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase(2,5-ddol dehydrogenase); Identified by match to protein family HMM PF00106.	0.957
sync_0156	sync_0154	sync_0156	sync_0154	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Membrane protein, putative.	0.992
sync_0156	sync_0387	sync_0156	sync_0387	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Ferredoxin-dependent glutamate synthase, Fd-GOGAT; Identified by match to protein family HMM PF00310; match to protein family HMM PF00478; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	0.671
sync_0156	sync_2830	sync_0156	sync_2830	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106.	0.966