sync_2390 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sync_2390

Predicted glutathione S-transferase; Identified by match to protein family HMM PF00043. (330 aa)

Predicted Functional Partners:

sync_2391

0.812

sync_2392

0.776

sync_2393

0.647

sync_2389

0.606

sync_1820

0.543

sync_1379

0.520

sync_2234

0.520

sync_2784

0.436

gloB

0.434

sync_1914

0.419

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
gloB	sync_2390	sync_1941	sync_2390	Metallo-beta-lactamase superfamily hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.	Predicted glutathione S-transferase; Identified by match to protein family HMM PF00043.	0.434
sync_1379	sync_2234	sync_1379	sync_2234	PDZ domain; Identified by match to protein family HMM PF00595.	Conserved hypothetical protein TIGR01033; Identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033.	0.520
sync_1379	sync_2390	sync_1379	sync_2390	PDZ domain; Identified by match to protein family HMM PF00595.	Predicted glutathione S-transferase; Identified by match to protein family HMM PF00043.	0.520
sync_1820	sync_2390	sync_1820	sync_2390	Conserved hypothetical protein.	Predicted glutathione S-transferase; Identified by match to protein family HMM PF00043.	0.543
sync_1914	sync_2390	sync_1914	sync_2390	Conserved hypothetical protein; Identified by similarity to GB:BAC89054.1.	Predicted glutathione S-transferase; Identified by match to protein family HMM PF00043.	0.419
sync_2234	sync_1379	sync_2234	sync_1379	Conserved hypothetical protein TIGR01033; Identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033.	PDZ domain; Identified by match to protein family HMM PF00595.	0.520
sync_2234	sync_2390	sync_2234	sync_2390	Conserved hypothetical protein TIGR01033; Identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033.	Predicted glutathione S-transferase; Identified by match to protein family HMM PF00043.	0.520
sync_2389	sync_2390	sync_2389	sync_2390	Aspartoacylase; Identified by match to protein family HMM PF04952; Belongs to the AspA/AstE family. Aspartoacylase subfamily.	Predicted glutathione S-transferase; Identified by match to protein family HMM PF00043.	0.606
sync_2389	sync_2391	sync_2389	sync_2391	Aspartoacylase; Identified by match to protein family HMM PF04952; Belongs to the AspA/AstE family. Aspartoacylase subfamily.	Putative membrane protein.	0.605
sync_2389	sync_2392	sync_2389	sync_2392	Aspartoacylase; Identified by match to protein family HMM PF04952; Belongs to the AspA/AstE family. Aspartoacylase subfamily.	ABC transporter, ATP binding domain; Identified by match to protein family HMM PF00005.	0.524
sync_2389	sync_2393	sync_2389	sync_2393	Aspartoacylase; Identified by match to protein family HMM PF04952; Belongs to the AspA/AstE family. Aspartoacylase subfamily.	CP12 domain, putative; Identified by match to protein family HMM PF02672.	0.505
sync_2390	gloB	sync_2390	sync_1941	Predicted glutathione S-transferase; Identified by match to protein family HMM PF00043.	Metallo-beta-lactamase superfamily hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.	0.434
sync_2390	sync_1379	sync_2390	sync_1379	Predicted glutathione S-transferase; Identified by match to protein family HMM PF00043.	PDZ domain; Identified by match to protein family HMM PF00595.	0.520
sync_2390	sync_1820	sync_2390	sync_1820	Predicted glutathione S-transferase; Identified by match to protein family HMM PF00043.	Conserved hypothetical protein.	0.543
sync_2390	sync_1914	sync_2390	sync_1914	Predicted glutathione S-transferase; Identified by match to protein family HMM PF00043.	Conserved hypothetical protein; Identified by similarity to GB:BAC89054.1.	0.419
sync_2390	sync_2234	sync_2390	sync_2234	Predicted glutathione S-transferase; Identified by match to protein family HMM PF00043.	Conserved hypothetical protein TIGR01033; Identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033.	0.520
sync_2390	sync_2389	sync_2390	sync_2389	Predicted glutathione S-transferase; Identified by match to protein family HMM PF00043.	Aspartoacylase; Identified by match to protein family HMM PF04952; Belongs to the AspA/AstE family. Aspartoacylase subfamily.	0.606
sync_2390	sync_2391	sync_2390	sync_2391	Predicted glutathione S-transferase; Identified by match to protein family HMM PF00043.	Putative membrane protein.	0.812
sync_2390	sync_2392	sync_2390	sync_2392	Predicted glutathione S-transferase; Identified by match to protein family HMM PF00043.	ABC transporter, ATP binding domain; Identified by match to protein family HMM PF00005.	0.776
sync_2390	sync_2393	sync_2390	sync_2393	Predicted glutathione S-transferase; Identified by match to protein family HMM PF00043.	CP12 domain, putative; Identified by match to protein family HMM PF02672.	0.647