STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sync_2395Ferric iron ABC transporter (FeT) family, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily. (436 aa)    
Predicted Functional Partners:
sync_1429
Lactose transport system permease protein; Identified by match to protein family HMM PF00528.
 
 
 0.964
sync_1403
ABC transporter for sugars, membrane component; Identified by match to protein family HMM PF00528.
 
 
 0.963
sync_0977
Putative sn-glycerol-3-phosphate ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 0.956
sync_1404
ABC transporter component, likely for sugar transport; Identified by match to protein family HMM PF00528.
 
 
 0.951
sync_1405
ABC transporter for sugars, ATP binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
  
  
 
0.911
sync_0114
Bacterial extracellular solute-binding protein, family 1; Identified by match to protein family HMM PF01547.
 
 
 0.805
sync_1402
ABC transporter for sugars, solute-binding protein; Identified by match to protein family HMM PF01547.
 
 
 0.754
sync_2811
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.690
sync_2817
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.690
obg
GTP-binding protein, GTP1/OBG family protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.
       0.578
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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