sync_2397 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

sync_2397

Possible ring-cleaving dioxygenase; Identified by match to protein family HMM PF00903. (133 aa)

Predicted Functional Partners:

mutS2

0.812

sync_0156

0.694

hemB

0.619

sync_0771

0.518

sync_0820

0.515

dnaJ

0.482

sync_1540

0.464

sync_1816

0.434

hli-1

0.416

hli-3

0.404

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
dnaJ	hemB	sync_2399	sync_2398	DnaJ3 protein; Identified by match to protein family HMM PF00226; match to protein family HMM PF01556.	Delta-aminolevulinic acid dehydratase; Identified by match to protein family HMM PF00490; Belongs to the ALAD family.	0.708
dnaJ	mutS2	sync_2399	sync_2396	DnaJ3 protein; Identified by match to protein family HMM PF00226; match to protein family HMM PF01556.	MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.	0.494
dnaJ	sync_0156	sync_2399	sync_0156	DnaJ3 protein; Identified by match to protein family HMM PF00226; match to protein family HMM PF01556.	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.929
dnaJ	sync_2397	sync_2399	sync_2397	DnaJ3 protein; Identified by match to protein family HMM PF00226; match to protein family HMM PF01556.	Possible ring-cleaving dioxygenase; Identified by match to protein family HMM PF00903.	0.482
hemB	dnaJ	sync_2398	sync_2399	Delta-aminolevulinic acid dehydratase; Identified by match to protein family HMM PF00490; Belongs to the ALAD family.	DnaJ3 protein; Identified by match to protein family HMM PF00226; match to protein family HMM PF01556.	0.708
hemB	mutS2	sync_2398	sync_2396	Delta-aminolevulinic acid dehydratase; Identified by match to protein family HMM PF00490; Belongs to the ALAD family.	MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.	0.618
hemB	sync_0156	sync_2398	sync_0156	Delta-aminolevulinic acid dehydratase; Identified by match to protein family HMM PF00490; Belongs to the ALAD family.	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.566
hemB	sync_2397	sync_2398	sync_2397	Delta-aminolevulinic acid dehydratase; Identified by match to protein family HMM PF00490; Belongs to the ALAD family.	Possible ring-cleaving dioxygenase; Identified by match to protein family HMM PF00903.	0.619
hli-1	sync_0771	sync_1238	sync_0771	Ferrochelatase.	Uncharacterized protein.	0.765
hli-1	sync_2397	sync_1238	sync_2397	Ferrochelatase.	Possible ring-cleaving dioxygenase; Identified by match to protein family HMM PF00903.	0.416
hli-3	sync_0771	sync_2227	sync_0771	Lhc-like protein Lhl4.	Uncharacterized protein.	0.771
hli-3	sync_2397	sync_2227	sync_2397	Lhc-like protein Lhl4.	Possible ring-cleaving dioxygenase; Identified by match to protein family HMM PF00903.	0.404
mutS2	dnaJ	sync_2396	sync_2399	MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.	DnaJ3 protein; Identified by match to protein family HMM PF00226; match to protein family HMM PF01556.	0.494
mutS2	hemB	sync_2396	sync_2398	MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.	Delta-aminolevulinic acid dehydratase; Identified by match to protein family HMM PF00490; Belongs to the ALAD family.	0.618
mutS2	sync_2397	sync_2396	sync_2397	MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.	Possible ring-cleaving dioxygenase; Identified by match to protein family HMM PF00903.	0.812
sync_0156	dnaJ	sync_0156	sync_2399	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	DnaJ3 protein; Identified by match to protein family HMM PF00226; match to protein family HMM PF01556.	0.929
sync_0156	hemB	sync_0156	sync_2398	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Delta-aminolevulinic acid dehydratase; Identified by match to protein family HMM PF00490; Belongs to the ALAD family.	0.566
sync_0156	sync_1540	sync_0156	sync_1540	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Bacterial regulatory proteins, Crp family protein.	0.707
sync_0156	sync_2397	sync_0156	sync_2397	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Possible ring-cleaving dioxygenase; Identified by match to protein family HMM PF00903.	0.694
sync_0771	hli-1	sync_0771	sync_1238	Uncharacterized protein.	Ferrochelatase.	0.765