STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sync_2400Conserved hypothetical protein. (122 aa)    
Predicted Functional Partners:
sync_2401
Sulfate transporter, sulfate permease (SulP) family protein; Identified by match to protein family HMM PF00916; match to protein family HMM PF01740.
       0.773
sync_2173
Cyanobacteria-specific protein.
  
     0.588
sync_2460
Conserved hypothetical protein; Identified by similarity to GB:CAE06850.1; match to protein family HMM PF02325.
  
     0.552
dnaJ
DnaJ3 protein; Identified by match to protein family HMM PF00226; match to protein family HMM PF01556.
       0.539
psbO
Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716.
  
     0.522
sync_1629
Conserved hypothetical protein; Identified by similarity to GB:CAE07548.1.
  
     0.509
sync_2402
Hypothetical protein; Identified by Glimmer2; putative.
       0.507
psaF
Photosystem I reaction center subunit III; Identified by match to protein family HMM PF02507.
  
     0.480
hemB
Delta-aminolevulinic acid dehydratase; Identified by match to protein family HMM PF00490; Belongs to the ALAD family.
       0.454
sync_0290
Conserved hypothetical protein.
  
     0.453
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.