STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_2409ParB nuclease domain protein; Identified by match to protein family HMM PF02195. (87 aa)    
Predicted Functional Partners:
sync_1322
Thioredoxin peroxidase; Identified by match to protein family HMM PF00578.
   
 0.888
hflX
GTP-binding protein HflX homolog; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis.
   
 0.888
sync_1468
Conserved hypothetical protein; Identified by similarity to GB:CAE07970.1.
  
     0.607
sync_0470
Possible Pex protein.
  
     0.568
sync_0281
Phosphorylase kinase alpha chain; Identified by match to protein family HMM PF05682.
  
     0.547
sync_2410
Hypothetical protein; Identified by Glimmer2; putative.
       0.539
sync_0785
Conserved hypothetical protein; Identified by similarity to OMNI:NTL04PM0361; match to protein family HMM PF07466.
  
     0.526
sync_1296
Conserved hypothetical protein; Identified by similarity to GB:BAC09630.1.
  
     0.517
sync_1225
Conserved hypothetical protein.
  
     0.489
sync_2077
Conserved hypothetical protein; Identified by similarity to GB:CAE20647.1.
  
     0.473
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.