Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| gid | sync_2450 | sync_1138 | sync_2450 | Gid protein; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily. | Putative RNA methylase family UPF0020 family; Identified by match to protein family HMM PF01170; Belongs to the methyltransferase superfamily. | 0.400 |
| gid | uppS | sync_1138 | sync_1031 | Gid protein; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily. | Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | 0.685 |
| pnpA | pyrG | sync_2088 | sync_2858 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.833 |
| pnpA | sync_2450 | sync_2088 | sync_2450 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | Putative RNA methylase family UPF0020 family; Identified by match to protein family HMM PF01170; Belongs to the methyltransferase superfamily. | 0.622 |
| pnpA | uppS | sync_2088 | sync_1031 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | 0.700 |
| pyrG | pnpA | sync_2858 | sync_2088 | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.833 |
| pyrG | sync_2450 | sync_2858 | sync_2450 | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | Putative RNA methylase family UPF0020 family; Identified by match to protein family HMM PF01170; Belongs to the methyltransferase superfamily. | 0.407 |
| pyrG | uppS | sync_2858 | sync_1031 | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | 0.696 |
| ribD | sync_2450 | sync_0821 | sync_2450 | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | Putative RNA methylase family UPF0020 family; Identified by match to protein family HMM PF01170; Belongs to the methyltransferase superfamily. | 0.489 |
| ribD | uppS | sync_0821 | sync_1031 | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | 0.526 |
| sync_2392 | sync_2450 | sync_2392 | sync_2450 | ABC transporter, ATP binding domain; Identified by match to protein family HMM PF00005. | Putative RNA methylase family UPF0020 family; Identified by match to protein family HMM PF01170; Belongs to the methyltransferase superfamily. | 0.406 |
| sync_2450 | gid | sync_2450 | sync_1138 | Putative RNA methylase family UPF0020 family; Identified by match to protein family HMM PF01170; Belongs to the methyltransferase superfamily. | Gid protein; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily. | 0.400 |
| sync_2450 | pnpA | sync_2450 | sync_2088 | Putative RNA methylase family UPF0020 family; Identified by match to protein family HMM PF01170; Belongs to the methyltransferase superfamily. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.622 |
| sync_2450 | pyrG | sync_2450 | sync_2858 | Putative RNA methylase family UPF0020 family; Identified by match to protein family HMM PF01170; Belongs to the methyltransferase superfamily. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.407 |
| sync_2450 | ribD | sync_2450 | sync_0821 | Putative RNA methylase family UPF0020 family; Identified by match to protein family HMM PF01170; Belongs to the methyltransferase superfamily. | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.489 |
| sync_2450 | sync_2392 | sync_2450 | sync_2392 | Putative RNA methylase family UPF0020 family; Identified by match to protein family HMM PF01170; Belongs to the methyltransferase superfamily. | ABC transporter, ATP binding domain; Identified by match to protein family HMM PF00005. | 0.406 |
| sync_2450 | uppS | sync_2450 | sync_1031 | Putative RNA methylase family UPF0020 family; Identified by match to protein family HMM PF01170; Belongs to the methyltransferase superfamily. | Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | 0.669 |
| uppS | gid | sync_1031 | sync_1138 | Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | Gid protein; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily. | 0.685 |
| uppS | pnpA | sync_1031 | sync_2088 | Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.700 |
| uppS | pyrG | sync_1031 | sync_2858 | Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.696 |
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