STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_2466Peroxisomal fatty acyl CoA ABC transporter (P-FAT) family, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF06472. (681 aa)    
Predicted Functional Partners:
sync_2465
Possible high light inducible protein.
       0.800
sync_2467
Identified by match to protein family HMM PF01230.
       0.789
recA
recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
   
   0.645
sync_1563
Identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231.
    
 0.594
sync_1945
cbbX protein homolog; Identified by match to protein family HMM PF00004; match to protein family HMM TIGR02880.
     
 0.563
sync_2093
Identified by match to protein family HMM PF00004.
     
 0.563
sync_2468
Mg chelatase homolog; Identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368.
       0.555
sync_0156
Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.
   
  
 0.521
sync_0566
NAD-dependent aldehyde dehydrogenase; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
     
 0.484
sync_1835
Identified by match to protein family HMM PF00171.
     
 0.484
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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