STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_2468Mg chelatase homolog; Identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368. (528 aa)    
Predicted Functional Partners:
sync_0539
Putative DNA protecting protein DprA; Identified by match to protein family HMM PF02481.
 
 0.827
sync_0718
DNA internalization competence protein, ComEC/Rec2 family protein; Identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360.
 
  
 0.634
ruvC
Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
  
   
 0.585
sync_2467
Identified by match to protein family HMM PF01230.
       0.585
sync_2465
Possible high light inducible protein.
       0.555
sync_2466
Peroxisomal fatty acyl CoA ABC transporter (P-FAT) family, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF06472.
       0.555
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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