STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_2484Ferredoxin thioredoxin reductase, catalytic beta chain; Catalytic subunit of the ferredoxin-thioredoxin reductase (FTR), which catalyzes the two-electron reduction of thioredoxins by the electrons provided by reduced ferredoxin. (140 aa)    
Predicted Functional Partners:
sync_2274
Ferredoxin-thioredoxin reductase variable chain.
  
 
 
 0.986
sufB
FeS assembly protein SufB; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980.
     
 0.887
psaF
Photosystem I reaction center subunit III; Identified by match to protein family HMM PF02507.
  
    0.774
sync_1329
Conserved hypothetical protein.
  
    0.773
sync_0290
Conserved hypothetical protein.
  
     0.771
psbW
Photosystem II reaction center protein PsbW; Identified by match to protein family HMM PF03912; match to protein family HMM TIGR03047; Belongs to the Psb28 family.
  
     0.768
psaE
Photosystem I reaction center subunit IV; Stabilizes the interaction between PsaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase; Belongs to the PsaE family.
  
  
 0.745
psbO
Photosystem II manganese-stabilizing protein; Identified by match to protein family HMM PF01716.
  
    0.740
sync_2096
Conserved hypothetical protein.
  
     0.740
sync_1331
Conserved hypothetical protein; Identified by similarity to GB:CAE20920.1.
  
     0.723
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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