STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_2491Identified by match to protein family HMM PF00614. (477 aa)    
Predicted Functional Partners:
sync_1563
Identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231.
 
 
 0.827
sync_1639
Conserved hypothetical protein; Identified by similarity to GB:CAE20668.1.
  
     0.734
sync_1957
CO2 hydration protein; Identified by match to protein family HMM TIGR01964.
  
     0.733
sync_0757
Conserved hypothetical protein.
 
     0.728
sync_2094
Conserved hypothetical protein; Identified by match to protein family HMM PF02620.
  
     0.713
sync_2489
Uncharacterized conserved protein; Identified by match to protein family HMM PF07498.
 
     0.713
sync_1365
Conserved hypothetical protein; Identified by similarity to GB:CAE20894.1.
  
     0.708
kaiA
Circadian clock protein KaiA; Component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, it enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonizing the interaction between kaiA and kaiC. A kaiA dimer is sufficient to enhance kaiC he [...]
  
     0.698
sync_0444
Conserved hypothetical protein.
  
     0.683
sync_0156
Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.
  
 
 0.679
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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