STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_2514Possible sodium transporter, Trk family protein; Identified by match to protein family HMM PF02386. (467 aa)    
Predicted Functional Partners:
sync_2515
K+ transporter, Trk family protein; Identified by match to protein family HMM PF02254.
 
 0.998
rfaG
Glycosyl transferases group 1; Identified by match to protein family HMM PF00534.
    
 0.913
sync_2138
Potassium transporter, voltage-gated ion channel (VIC) family protein; Identified by match to protein family HMM PF02080; match to protein family HMM PF02254; match to protein family HMM PF07885.
 
 
 0.823
sync_0197
Cation transporter, voltage-gated ion channel (VIC) family protein; Identified by match to protein family HMM PF00520; match to protein family HMM PF07885.
  
 
 0.747
sync_0476
Cation transporter, voltage-gated ion channel (VIC) family protein; Identified by match to protein family HMM PF00520; match to protein family HMM PF07885.
  
 
 0.747
anmK
Predicted molecular chaperone; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.
  
    0.719
hflX
GTP-binding protein HflX homolog; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis.
       0.583
sync_2511
NADH dehydrogenase, FAD-containing subunit; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992.
     
 0.548
sync_2911
Chloride transporter, chloride channel (ClC) family protein; Identified by match to protein family HMM PF00654.
  
  
 0.500
sync_0156
Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.
     
 0.491
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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