STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_2514Possible sodium transporter, Trk family protein; Identified by match to protein family HMM PF02386. (467 aa)    
Predicted Functional Partners:
sync_2515
K+ transporter, Trk family protein; Identified by match to protein family HMM PF02254.
 
 0.998
rfaG
Glycosyl transferases group 1; Identified by match to protein family HMM PF00534.
    
 0.933
anmK
Predicted molecular chaperone; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.
  
    0.750
sync_2138
Potassium transporter, voltage-gated ion channel (VIC) family protein; Identified by match to protein family HMM PF02080; match to protein family HMM PF02254; match to protein family HMM PF07885.
 
 
 0.712
sync_2511
NADH dehydrogenase, FAD-containing subunit; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992.
     
 0.598
sync_0197
Cation transporter, voltage-gated ion channel (VIC) family protein; Identified by match to protein family HMM PF00520; match to protein family HMM PF07885.
  
 
 0.589
sync_0476
Cation transporter, voltage-gated ion channel (VIC) family protein; Identified by match to protein family HMM PF00520; match to protein family HMM PF07885.
  
 
 0.589
hflX
GTP-binding protein HflX homolog; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis.
       0.584
dacA
Conserved hypothetical protein TIGR00159; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
  
   
 0.481
sync_2509
Transcriptional activator, putative, Baf family protein; Identified by match to protein family HMM TIGR00671.
       0.479
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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