STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yihYIdentified by match to protein family HMM PF03631. (310 aa)    
Predicted Functional Partners:
sync_2533
Possible Zinc finger, C3HC4 type (RING finger).
       0.655
sync_0733
Uncharacterized secreted or membrane protein.
  
     0.494
sync_1110
ParA family chromosome partitioning protein.
  
     0.470
sync_0937
Conserved hypothetical protein.
  
     0.457
sync_2544
Putative membrane protein; Identified by similarity to GB:CAE20354.1.
 
     0.444
sync_0892
Ferredoxin; Identified by match to protein family HMM PF00111.
  
    0.432
sync_1194
Possible oxidoreductase; Identified by match to protein family HMM PF01565.
 
     0.421
sync_0765
DnaJ domain protein; Identified by match to protein family HMM PF00226.
  
     0.419
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.