sync_2540 protein (Synechococcus sp. CC9311)

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Predicted Interactions

gene neighborhood

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[Homology]

Score

sync_2540

Identified by match to protein family HMM PF00459. (254 aa)

Predicted Functional Partners:

suhB,ssyA

0.928

sync_2087

0.786

rpoZ

0.710

nusA

0.688

sync_2541

0.684

sync_0156

0.669

rpoB

0.661

sync_2542

0.652

nusG

0.649

sync_0010

0.621

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
nusA	nusG	sync_2371	sync_2728	Transcription termination factor NusA; Participates in both transcription termination and antitermination.	Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.	0.960
nusA	rpoB	sync_2371	sync_2358	Transcription termination factor NusA; Participates in both transcription termination and antitermination.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.993
nusA	rpoZ	sync_2371	sync_2269	Transcription termination factor NusA; Participates in both transcription termination and antitermination.	Putative DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.915
nusA	suhB,ssyA	sync_2371	sync_1395	Transcription termination factor NusA; Participates in both transcription termination and antitermination.	Inositol-1-monophosphatase; Identified by match to protein family HMM PF00459; Belongs to the inositol monophosphatase superfamily.	0.688
nusA	sync_0010	sync_2371	sync_0010	Transcription termination factor NusA; Participates in both transcription termination and antitermination.	Putative transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.	0.841
nusA	sync_2540	sync_2371	sync_2540	Transcription termination factor NusA; Participates in both transcription termination and antitermination.	Identified by match to protein family HMM PF00459.	0.688
nusG	nusA	sync_2728	sync_2371	Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.	Transcription termination factor NusA; Participates in both transcription termination and antitermination.	0.960
nusG	rpoB	sync_2728	sync_2358	Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.975
nusG	rpoZ	sync_2728	sync_2269	Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.	Putative DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.791
nusG	suhB,ssyA	sync_2728	sync_1395	Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.	Inositol-1-monophosphatase; Identified by match to protein family HMM PF00459; Belongs to the inositol monophosphatase superfamily.	0.649
nusG	sync_0010	sync_2728	sync_0010	Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.	Putative transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.	0.751
nusG	sync_0156	sync_2728	sync_0156	Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.551
nusG	sync_2540	sync_2728	sync_2540	Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.	Identified by match to protein family HMM PF00459.	0.649
rpoB	nusA	sync_2358	sync_2371	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription termination factor NusA; Participates in both transcription termination and antitermination.	0.993
rpoB	nusG	sync_2358	sync_2728	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.	0.975
rpoB	rpoZ	sync_2358	sync_2269	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Putative DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.993
rpoB	suhB,ssyA	sync_2358	sync_1395	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Inositol-1-monophosphatase; Identified by match to protein family HMM PF00459; Belongs to the inositol monophosphatase superfamily.	0.661
rpoB	sync_0010	sync_2358	sync_0010	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Putative transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.	0.686
rpoB	sync_0156	sync_2358	sync_0156	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.684
rpoB	sync_2540	sync_2358	sync_2540	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Identified by match to protein family HMM PF00459.	0.661