sync_2541 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

sync_2541

Possible RND family outer membrane efflux protein; Identified by match to protein family HMM PF02321. (574 aa)

Predicted Functional Partners:

sync_2542

0.752

sync_2767

0.742

sync_2503

0.731

sync_0101

0.730

sync_2579

0.725

sync_2581

0.725

sync_2717

0.712

sync_0315

0.707

sync_2540

0.703

sync_0678

0.702

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
sync_0101	sync_0678	Efflux transporter, RND family, MFP subunit subfamily; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Possible porin; Identified by match to protein family HMM PF00395; Belongs to the OprB family.	0.456
sync_0101	sync_2503	Efflux transporter, RND family, MFP subunit subfamily; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Efflux transporter, RND family, MFP subunit subfamily; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.918
sync_0101	sync_2541	Efflux transporter, RND family, MFP subunit subfamily; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Possible RND family outer membrane efflux protein; Identified by match to protein family HMM PF02321.	0.730
sync_0101	sync_2579	Efflux transporter, RND family, MFP subunit subfamily; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Possible porin; Identified by match to protein family HMM PF00395; Belongs to the OprB family.	0.466
sync_0101	sync_2581	Efflux transporter, RND family, MFP subunit subfamily; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Possible porin; Identified by match to protein family HMM PF00395; Belongs to the OprB family.	0.450
sync_0101	sync_2767	Efflux transporter, RND family, MFP subunit subfamily; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Efflux transporter, RND family, MFP subunit subfamily; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.915
sync_0315	sync_0678	Uncharacterized conserved membrane protein.	Possible porin; Identified by match to protein family HMM PF00395; Belongs to the OprB family.	0.772
sync_0315	sync_2541	Uncharacterized conserved membrane protein.	Possible RND family outer membrane efflux protein; Identified by match to protein family HMM PF02321.	0.707
sync_0315	sync_2579	Uncharacterized conserved membrane protein.	Possible porin; Identified by match to protein family HMM PF00395; Belongs to the OprB family.	0.771
sync_0315	sync_2581	Uncharacterized conserved membrane protein.	Possible porin; Identified by match to protein family HMM PF00395; Belongs to the OprB family.	0.772
sync_0315	sync_2717	Uncharacterized conserved membrane protein.	Possible general (type II) secretion pathway protein D precursor; Identified by match to protein family HMM PF00263; match to protein family HMM PF07660; Belongs to the bacterial secretin family.	0.637
sync_0678	sync_0101	Possible porin; Identified by match to protein family HMM PF00395; Belongs to the OprB family.	Efflux transporter, RND family, MFP subunit subfamily; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.456
sync_0678	sync_0315	Possible porin; Identified by match to protein family HMM PF00395; Belongs to the OprB family.	Uncharacterized conserved membrane protein.	0.772
sync_0678	sync_2541	Possible porin; Identified by match to protein family HMM PF00395; Belongs to the OprB family.	Possible RND family outer membrane efflux protein; Identified by match to protein family HMM PF02321.	0.702
sync_0678	sync_2717	Possible porin; Identified by match to protein family HMM PF00395; Belongs to the OprB family.	Possible general (type II) secretion pathway protein D precursor; Identified by match to protein family HMM PF00263; match to protein family HMM PF07660; Belongs to the bacterial secretin family.	0.716
sync_2503	sync_0101	Efflux transporter, RND family, MFP subunit subfamily; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Efflux transporter, RND family, MFP subunit subfamily; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.918
sync_2503	sync_2541	Efflux transporter, RND family, MFP subunit subfamily; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Possible RND family outer membrane efflux protein; Identified by match to protein family HMM PF02321.	0.731
sync_2503	sync_2767	Efflux transporter, RND family, MFP subunit subfamily; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Efflux transporter, RND family, MFP subunit subfamily; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.923
sync_2540	sync_2541	Identified by match to protein family HMM PF00459.	Possible RND family outer membrane efflux protein; Identified by match to protein family HMM PF02321.	0.703
sync_2540	sync_2542	Identified by match to protein family HMM PF00459.	Possible Fe-S oxidoreductase; Identified by match to protein family HMM PF04459.	0.702