STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_2553Uncharacterized conserved protein; Identified by match to protein family HMM PF04339. (431 aa)    
Predicted Functional Partners:
sync_2552
Conserved hypothetical protein; Identified by similarity to GB:CAE08712.1.
       0.736
sync_1254
SAM-dependent methyltransferase; Identified by match to protein family HMM PF06080.
 
     0.575
sync_2554
Hypothetical protein; Identified by Glimmer2; putative.
       0.570
sync_1161
Glutathione S-transferase; Identified by match to protein family HMM PF02798.
  
     0.472
sync_1172
Glutathione S-transferase gst; Identified by match to protein family HMM PF02798.
  
     0.437
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
Server load: low (34%) [HD]