Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
sync_2567Oligoketide cyclase/lipid transport protein homolog; Identified by match to protein family HMM PF03364. (167 aa)    
Predicted Functional Partners:
sync_2568
Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
 
     0.870
sync_2096
Conserved hypothetical protein.
  
   
 0.680
sync_2566
Hypothetical protein; Identified by Glimmer2; putative.
       0.655
sync_2569
Iron-sulfur cluster assembly accessory protein; Identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; Belongs to the HesB/IscA family.
       0.619
sync_1039
PsbP; Identified by match to protein family HMM PF01789.
  
     0.609
sync_2572
Conserved hypothetical protein.
 
     0.598
sync_1001
Possible glucose 6-phosphate dehydrogenase effector OpcA.
  
     0.593
sync_1994
Identified by match to protein family HMM PF06485.
  
    0.593
sync_2571
Conserved hypothetical protein; Identified by similarity to GB:CAE22145.1.
 
     0.589
sync_2925
Uncharacterized membrane protein.
  
    0.588
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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