sync_2573 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

sync_2573

Conserved hypothetical protein TIGR01777; Identified by match to protein family HMM PF01370; match to protein family HMM TIGR01777. (314 aa)

Predicted Functional Partners:

sync_2014

0.786

minE

0.763

sync_2574

0.682

ndhO

0.584

hemH

0.401

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
hemH	sync_2573	sync_2000	sync_2573	Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.	Conserved hypothetical protein TIGR01777; Identified by match to protein family HMM PF01370; match to protein family HMM TIGR01777.	0.401
minE	sync_2014	sync_0544	sync_2014	Cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.	Signal peptidase I; Identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; Belongs to the peptidase S26 family.	0.950
minE	sync_2573	sync_0544	sync_2573	Cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.	Conserved hypothetical protein TIGR01777; Identified by match to protein family HMM PF01370; match to protein family HMM TIGR01777.	0.763
ndhO	sync_2573	sync_2575	sync_2573	Conserved hypothetical protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.	Conserved hypothetical protein TIGR01777; Identified by match to protein family HMM PF01370; match to protein family HMM TIGR01777.	0.584
ndhO	sync_2574	sync_2575	sync_2574	Conserved hypothetical protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.	Transporter, monovalent cation:proton antiporter-2 (CPA2) family protein; Identified by match to protein family HMM PF00999.	0.559
sync_2014	minE	sync_2014	sync_0544	Signal peptidase I; Identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; Belongs to the peptidase S26 family.	Cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.	0.950
sync_2014	sync_2573	sync_2014	sync_2573	Signal peptidase I; Identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; Belongs to the peptidase S26 family.	Conserved hypothetical protein TIGR01777; Identified by match to protein family HMM PF01370; match to protein family HMM TIGR01777.	0.786
sync_2573	hemH	sync_2573	sync_2000	Conserved hypothetical protein TIGR01777; Identified by match to protein family HMM PF01370; match to protein family HMM TIGR01777.	Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.	0.401
sync_2573	minE	sync_2573	sync_0544	Conserved hypothetical protein TIGR01777; Identified by match to protein family HMM PF01370; match to protein family HMM TIGR01777.	Cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.	0.763
sync_2573	ndhO	sync_2573	sync_2575	Conserved hypothetical protein TIGR01777; Identified by match to protein family HMM PF01370; match to protein family HMM TIGR01777.	Conserved hypothetical protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.	0.584
sync_2573	sync_2014	sync_2573	sync_2014	Conserved hypothetical protein TIGR01777; Identified by match to protein family HMM PF01370; match to protein family HMM TIGR01777.	Signal peptidase I; Identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; Belongs to the peptidase S26 family.	0.786
sync_2573	sync_2574	sync_2573	sync_2574	Conserved hypothetical protein TIGR01777; Identified by match to protein family HMM PF01370; match to protein family HMM TIGR01777.	Transporter, monovalent cation:proton antiporter-2 (CPA2) family protein; Identified by match to protein family HMM PF00999.	0.682
sync_2574	ndhO	sync_2574	sync_2575	Transporter, monovalent cation:proton antiporter-2 (CPA2) family protein; Identified by match to protein family HMM PF00999.	Conserved hypothetical protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.	0.559
sync_2574	sync_2573	sync_2574	sync_2573	Transporter, monovalent cation:proton antiporter-2 (CPA2) family protein; Identified by match to protein family HMM PF00999.	Conserved hypothetical protein TIGR01777; Identified by match to protein family HMM PF01370; match to protein family HMM TIGR01777.	0.682