STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dgkADiacylglycerol kinase; Identified by match to protein family HMM PF01219. (157 aa)    
Predicted Functional Partners:
ybeY
Hypothetical UPF0054 protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.933
cdsA
Phosphatidate cytidylyltransferase; Identified by match to protein family HMM PF01148; Belongs to the CDS family.
    
 0.917
sync_0157
Conserved hypothetical protein.
  
 
  0.905
sync_2601
1-acyl-sn-glycerol-3-phosphate acyltransferase; Identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530.
     
 0.905
sync_1876
Lipase family protein.
     
 0.904
sync_0061
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
   
 
  0.900
sync_2663
Para-aminobenzoate synthase component II; Identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566.
       0.816
glpA
Glycerol dehydrogenase homolog; Identified by match to protein family HMM PF01266.
    
  0.800
sync_2660
Conserved hypothetical protein; Identified by similarity to GB:CAE22238.1.
       0.751
prfB
Peptide chain release factor 2, programmed frameshift; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
       0.672
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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