sync_2734 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sync_2734

Conserved hypothetical protein; Identified by similarity to GB:CAE22255.1. (105 aa)

Predicted Functional Partners:

sync_2733

0.812

sync_2735

0.596

argJ

0.492

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
argJ	sync_2733	sync_2736	sync_2733	Arginine biosynthesis bifunctional protein ArgJ; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.	ABC1 domain protein; Identified by match to protein family HMM PF03109.	0.492
argJ	sync_2734	sync_2736	sync_2734	Arginine biosynthesis bifunctional protein ArgJ; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.	Conserved hypothetical protein; Identified by similarity to GB:CAE22255.1.	0.492
argJ	sync_2735	sync_2736	sync_2735	Arginine biosynthesis bifunctional protein ArgJ; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.	Proline-rich region.	0.625
sync_2733	argJ	sync_2733	sync_2736	ABC1 domain protein; Identified by match to protein family HMM PF03109.	Arginine biosynthesis bifunctional protein ArgJ; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.	0.492
sync_2733	sync_2734	sync_2733	sync_2734	ABC1 domain protein; Identified by match to protein family HMM PF03109.	Conserved hypothetical protein; Identified by similarity to GB:CAE22255.1.	0.812
sync_2733	sync_2735	sync_2733	sync_2735	ABC1 domain protein; Identified by match to protein family HMM PF03109.	Proline-rich region.	0.596
sync_2734	argJ	sync_2734	sync_2736	Conserved hypothetical protein; Identified by similarity to GB:CAE22255.1.	Arginine biosynthesis bifunctional protein ArgJ; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.	0.492
sync_2734	sync_2733	sync_2734	sync_2733	Conserved hypothetical protein; Identified by similarity to GB:CAE22255.1.	ABC1 domain protein; Identified by match to protein family HMM PF03109.	0.812
sync_2734	sync_2735	sync_2734	sync_2735	Conserved hypothetical protein; Identified by similarity to GB:CAE22255.1.	Proline-rich region.	0.596
sync_2735	argJ	sync_2735	sync_2736	Proline-rich region.	Arginine biosynthesis bifunctional protein ArgJ; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.	0.625
sync_2735	sync_2733	sync_2735	sync_2733	Proline-rich region.	ABC1 domain protein; Identified by match to protein family HMM PF03109.	0.596
sync_2735	sync_2734	sync_2735	sync_2734	Proline-rich region.	Conserved hypothetical protein; Identified by similarity to GB:CAE22255.1.	0.596