Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sync_2781Rubredoxin; Identified by match to protein family HMM PF00301; match to protein family HMM PF02915. (237 aa)    
Predicted Functional Partners:
sync_2779
Flavoprotein; Identified by match to protein family HMM PF00753; match to protein family HMM PF01613.
 
  
 0.889
dfa
Flavodoxin:Flavin reductase-like domain; Identified by match to protein family HMM PF00258; match to protein family HMM PF01613.
 
   
 0.786
sync_0241
Rubredoxin; Identified by match to protein family HMM PF00301.
 
  
 0.577
sync_0256
Conserved hypothetical protein.
  
     0.567
sync_1451
Conserved hypothetical protein.
  
     0.489
hflX
GTP-binding protein HflX homolog; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis.
  
  
 0.489
sync_0235
Conserved hypothetical protein.
  
     0.461
sync_2778
Possible Tripartite transporter component (TRAP-T family); Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786.
       0.460
sync_1926
Conserved hypothetical protein.
 
     0.449
sync_2776
Possible Tripartite transporter component (TRAP-T family), substrate binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
       0.421
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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