STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sync_2809Uncharacterized conserved membrane protein; Identified by match to protein family HMM PF00597. (202 aa)    
Predicted Functional Partners:
sync_1170
Possible L-Asparaginase II; Identified by match to protein family HMM PF04055.
 
   
 0.795
sync_1936
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
 
     0.750
sync_1935
Conserved hypothetical protein.
 
     0.718
sync_2810
Hypothetical protein; Identified by Glimmer2; putative.
       0.553
sync_1832
Protein of unknown function (DUF1499) superfamily protein; Identified by match to protein family HMM PF07386.
 
     0.536
sync_1311
Uncharacterized conserved membrane protein; Identified by match to protein family HMM PF01169.
    
 
 0.524
sync_2811
Hypothetical protein; Identified by Glimmer2; putative.
       0.421
sync_2812
Mechanosensitive ion channel family protein, putative; Identified by match to protein family HMM PF00924.
       0.421
sync_0109
Uncharacterized DedA family conserved membrane protein; Identified by match to protein family HMM PF00597.
  
  
 0.408
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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