Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
sync_2811Hypothetical protein; Identified by Glimmer2; putative. (381 aa)    
Predicted Functional Partners:
sync_2812
Mechanosensitive ion channel family protein, putative; Identified by match to protein family HMM PF00924.
 
     0.818
sync_2059
Hypothetical protein; Identified by Glimmer2; putative; Belongs to the OprB family.
 
    0.753
sync_1019
Conserved hypothetical protein; Identified by similarity to GB:CAE07461.1.
  
     0.750
sync_0306
Repeats containing protein.
  
     0.738
sync_2139
Conserved hypothetical protein.
  
     0.725
sync_0118
Conserved hypothetical protein.
  
   
 0.720
sync_2918
Lipoprotein, putative; Identified by match to protein family HMM TIGR03042.
  
     0.712
sync_1403
ABC transporter for sugars, membrane component; Identified by match to protein family HMM PF00528.
  
 
 0.701
sync_1429
Lactose transport system permease protein; Identified by match to protein family HMM PF00528.
  
 
 0.701
sync_0813
Conserved hypothetical protein.
  
     0.693
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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