STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_2812Mechanosensitive ion channel family protein, putative; Identified by match to protein family HMM PF00924. (456 aa)    
Predicted Functional Partners:
sync_2811
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.818
sync_2810
Hypothetical protein; Identified by Glimmer2; putative.
       0.572
sync_2685
Mechanosensitive ion channel family protein; Identified by match to protein family HMM PF00924.
 
  
 0.571
sync_2380
Domain of unknown function (DUF389) family protein; Identified by match to protein family HMM PF04087.
 
     0.469
sync_2809
Uncharacterized conserved membrane protein; Identified by match to protein family HMM PF00597.
       0.421
sync_2807
Domain of unknown function (DUF389) family protein; Identified by match to protein family HMM PF04087.
 
     0.412
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.