sync_2860 protein (Synechococcus sp. CC9311)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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textmining

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experimentally determined

co-expression

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gene neighborhood

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[Homology]

Score

sync_2860

Conserved hypothetical protein. (243 aa)

Predicted Functional Partners:

hlyB

0.877

sync_0392

0.791

hlyD

0.768

sync_0563

0.747

sync_1952

0.745

sync_2572

0.723

sync_1639

0.721

sync_1865

0.721

sync_0757

0.717

sync_1473

0.704

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
hlyB	hlyD	sync_2861	sync_2862	ABC transporter, multi drug efflux family protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01846.	Possible transporter component; Identified by match to protein family HMM PF00529.	0.969
hlyB	sync_0392	sync_2861	sync_0392	ABC transporter, multi drug efflux family protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01846.	Proline-rich region.	0.430
hlyB	sync_0563	sync_2861	sync_0563	ABC transporter, multi drug efflux family protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01846.	Uncharacterized protein.	0.450
hlyB	sync_1865	sync_2861	sync_1865	ABC transporter, multi drug efflux family protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01846.	Conserved hypothetical protein.	0.493
hlyB	sync_2860	sync_2861	sync_2860	ABC transporter, multi drug efflux family protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01846.	Conserved hypothetical protein.	0.877
hlyD	hlyB	sync_2862	sync_2861	Possible transporter component; Identified by match to protein family HMM PF00529.	ABC transporter, multi drug efflux family protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01846.	0.969
hlyD	sync_0392	sync_2862	sync_0392	Possible transporter component; Identified by match to protein family HMM PF00529.	Proline-rich region.	0.543
hlyD	sync_0563	sync_2862	sync_0563	Possible transporter component; Identified by match to protein family HMM PF00529.	Uncharacterized protein.	0.537
hlyD	sync_2860	sync_2862	sync_2860	Possible transporter component; Identified by match to protein family HMM PF00529.	Conserved hypothetical protein.	0.768
sync_0392	hlyB	sync_0392	sync_2861	Proline-rich region.	ABC transporter, multi drug efflux family protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01846.	0.430
sync_0392	hlyD	sync_0392	sync_2862	Proline-rich region.	Possible transporter component; Identified by match to protein family HMM PF00529.	0.543
sync_0392	sync_0563	sync_0392	sync_0563	Proline-rich region.	Uncharacterized protein.	0.774
sync_0392	sync_0757	sync_0392	sync_0757	Proline-rich region.	Conserved hypothetical protein.	0.744
sync_0392	sync_1473	sync_0392	sync_1473	Proline-rich region.	Predicted calcineurin family phosphoesterase.	0.442
sync_0392	sync_1639	sync_0392	sync_1639	Proline-rich region.	Conserved hypothetical protein; Identified by similarity to GB:CAE20668.1.	0.726
sync_0392	sync_1865	sync_0392	sync_1865	Proline-rich region.	Conserved hypothetical protein.	0.772
sync_0392	sync_1952	sync_0392	sync_1952	Proline-rich region.	Conserved hypothetical protein.	0.623
sync_0392	sync_2572	sync_0392	sync_2572	Proline-rich region.	Conserved hypothetical protein.	0.537
sync_0392	sync_2860	sync_0392	sync_2860	Proline-rich region.	Conserved hypothetical protein.	0.791
sync_0563	hlyB	sync_0563	sync_2861	Uncharacterized protein.	ABC transporter, multi drug efflux family protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01846.	0.450