STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hlyDPossible transporter component; Identified by match to protein family HMM PF00529. (419 aa)    
Predicted Functional Partners:
hlyB
ABC transporter, multi drug efflux family protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01846.
 
 
 0.969
sync_1214
ABC transporter RzcB, putative.
 
 
 0.802
sync_2860
Conserved hypothetical protein.
 
   
 0.768
sync_2541
Possible RND family outer membrane efflux protein; Identified by match to protein family HMM PF02321.
 
 
 0.677
sync_0709
Type I secretion target GGXGXDXXX repeat protein; Identified by match to protein family HMM PF00353.
 
  
 0.645
sync_1215
ABC transporter, ATP-binding protein domain protein; Identified by match to protein family HMM PF00005.
 
 
 0.643
sync_1217
Structural toxin protein RtxA; Identified by match to protein family HMM PF00353.
 
  
 0.639
sync_1260
Type I secretion target GGXGXDXXX repeat protein; Identified by match to protein family HMM PF00353.
 
  
 0.626
sync_1129
Type I secretion target GGXGXDXXX repeat protein; Identified by match to protein family HMM PF00353.
 
  
 0.619
sync_1041
Putative RND family outer membrane efflux protein; Identified by match to protein family HMM PF02321.
 
 
 0.608
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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