Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sync_2871High-affinity branched-chain amino acid transport protein LivH; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. (384 aa)    
Predicted Functional Partners:
sync_2870
ABC transporter permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
sync_2868
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.997
sync_2869
ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.997
sync_2872
Urea ABC transporter, periplasmic urea-binding protein; Identified by similarity to GB:CAB70948.1.
 
 
 0.994
sync_0634
Hydrophobic amino acid ABC transporter (HAAT) family, periplasmic amino acid-binding protein; Identified by match to protein family HMM PF01094.
 
  
 0.806
sync_2631
Receptor family ligand binding protein; Identified by match to protein family HMM PF01094.
 
  
 0.765
ureE
Urease accessory protein E; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.
 
   
 0.737
ureF
Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
   
 0.710
ureD
Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
   
 0.708
ureG
Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
     
 0.694
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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