Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| sync_2868 | sync_2870 | sync_2868 | sync_2870 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | ABC transporter permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. | 0.999 |
| sync_2868 | sync_2871 | sync_2868 | sync_2871 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | High-affinity branched-chain amino acid transport protein LivH; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. | 0.997 |
| sync_2868 | sync_2872 | sync_2868 | sync_2872 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Urea ABC transporter, periplasmic urea-binding protein; Identified by similarity to GB:CAB70948.1. | 0.987 |
| sync_2868 | ureA | sync_2868 | sync_2877 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Urease, gamma subunit; Identified by similarity to SP:P18316; match to protein family HMM PF00547; match to protein family HMM TIGR00193; Belongs to the urease gamma subunit family. | 0.434 |
| sync_2868 | ureB | sync_2868 | sync_2878 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Urease, beta subunit; Identified by similarity to SP:P74386; match to protein family HMM PF00699; match to protein family HMM TIGR00192; Belongs to the urease beta subunit family. | 0.476 |
| sync_2868 | ureC | sync_2868 | sync_2879 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Urease, alpha subunit; Identified by similarity to SP:P18314; match to protein family HMM PF00449; match to protein family HMM PF01979; match to protein family HMM TIGR01792; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. | 0.493 |
| sync_2868 | ureD | sync_2868 | sync_2876 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.678 |
| sync_2868 | ureE | sync_2868 | sync_2875 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Urease accessory protein E; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family. | 0.698 |
| sync_2868 | ureF | sync_2868 | sync_2874 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.696 |
| sync_2868 | ureG | sync_2868 | sync_2873 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG. | 0.629 |
| sync_2870 | sync_2868 | sync_2870 | sync_2868 | ABC transporter permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | 0.999 |
| sync_2870 | sync_2871 | sync_2870 | sync_2871 | ABC transporter permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. | High-affinity branched-chain amino acid transport protein LivH; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. | 0.999 |
| sync_2870 | sync_2872 | sync_2870 | sync_2872 | ABC transporter permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. | Urea ABC transporter, periplasmic urea-binding protein; Identified by similarity to GB:CAB70948.1. | 0.994 |
| sync_2870 | ureB | sync_2870 | sync_2878 | ABC transporter permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. | Urease, beta subunit; Identified by similarity to SP:P74386; match to protein family HMM PF00699; match to protein family HMM TIGR00192; Belongs to the urease beta subunit family. | 0.405 |
| sync_2870 | ureC | sync_2870 | sync_2879 | ABC transporter permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. | Urease, alpha subunit; Identified by similarity to SP:P18314; match to protein family HMM PF00449; match to protein family HMM PF01979; match to protein family HMM TIGR01792; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. | 0.446 |
| sync_2870 | ureD | sync_2870 | sync_2876 | ABC transporter permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. | Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.694 |
| sync_2870 | ureE | sync_2870 | sync_2875 | ABC transporter permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. | Urease accessory protein E; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family. | 0.679 |
| sync_2870 | ureF | sync_2870 | sync_2874 | ABC transporter permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. | Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.693 |
| sync_2870 | ureG | sync_2870 | sync_2873 | ABC transporter permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. | Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG. | 0.601 |
| sync_2871 | sync_2868 | sync_2871 | sync_2868 | High-affinity branched-chain amino acid transport protein LivH; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | 0.997 |
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