STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_2883Possible transglutaminase-like enzyme; Identified by match to protein family HMM PF01841. (299 aa)    
Predicted Functional Partners:
sync_2881
Conserved hypothetical protein; Identified by similarity to GB:CAE08971.1; match to protein family HMM PF04169; match to protein family HMM PF04174.
 
  
 0.963
sync_2882
Bacterial domain of unknown function (DUF403) superfamily protein; Identified by match to protein family HMM PF04168.
 
  
 0.961
sync_2671
Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
     
 0.486
sync_2880
Glutamine amidotransferase, class I; Identified by match to protein family HMM PF00117.
  
    0.452
ureB
Urease, beta subunit; Identified by similarity to SP:P74386; match to protein family HMM PF00699; match to protein family HMM TIGR00192; Belongs to the urease beta subunit family.
       0.419
ureC
Urease, alpha subunit; Identified by similarity to SP:P18314; match to protein family HMM PF00449; match to protein family HMM PF01979; match to protein family HMM TIGR01792; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.
       0.419
sync_1512
GGDEF/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
     
 0.416
ureA
Urease, gamma subunit; Identified by similarity to SP:P18316; match to protein family HMM PF00547; match to protein family HMM TIGR00193; Belongs to the urease gamma subunit family.
       0.410
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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