STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_2889Nitrate reductase associated protein; Identified by match to protein family HMM TIGR02664. (151 aa)    
Predicted Functional Partners:
sync_2161
Conserved hypothetical protein.
  
     0.750
sync_2274
Ferredoxin-thioredoxin reductase variable chain.
  
     0.749
sync_0757
Conserved hypothetical protein.
  
     0.748
sync_1639
Conserved hypothetical protein; Identified by similarity to GB:CAE20668.1.
  
     0.742
sync_0351
Conserved hypothetical protein; Identified by similarity to GB:CAE06815.1.
  
     0.740
sync_1957
CO2 hydration protein; Identified by match to protein family HMM TIGR01964.
  
     0.735
sync_0291
Conserved hypothetical protein.
  
     0.729
sync_0563
Uncharacterized protein.
  
     0.724
sync_0444
Conserved hypothetical protein.
  
     0.722
kaiA
Circadian clock protein KaiA; Component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, it enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonizing the interaction between kaiA and kaiC. A kaiA dimer is sufficient to enhance kaiC he [...]
  
     0.714
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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