Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGA84637.1LysM domain-containing protein; PFAM: LysM domain. (341 aa)    
Predicted Functional Partners:
AGA88192.1
Type IV pilus secretin PilQ/competence protein; PFAM: Bacterial type II/III secretion system short domain; Secretin and TonB N terminus short domain; Bacterial type II and III secretion system protein; TIGRFAM: type IV pilus secretin (or competence protein) PilQ.
 
 
 
 0.976
AGA88343.1
Hypothetical protein; PFAM: Domain of unknown function (DUF1508).
 
   0.927
AGA88194.1
PFAM: Pilus assembly protein, PilO.
 
   0.913
AGA88195.1
PFAM: Fimbrial assembly protein (PilN).
  
 
   0.910
AGA88196.1
PFAM: Competence protein A; TIGRFAM: type IV pilus assembly protein PilM.
  
 
   0.909
AGA86245.1
Tfp pilus assembly protein PilZ; PFAM: PilZ domain.
  
    0.779
AGA88193.1
PFAM: Pilus assembly protein, PilP.
 
     0.774
AGA87861.1
TIGRFAM: type IV pilus modification protein PilV; prepilin-type N-terminal cleavage/methylation domain.
  
     0.747
AGA87862.1
Tfp pilus assembly protein PilW.
  
    0.742
AGA85908.1
Hypothetical protein.
  
   
 0.737
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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