STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA84643.1Putative NADH-flavin reductase. (203 aa)    
Predicted Functional Partners:
AGA85225.1
Hypothetical protein.
  
    0.818
AGA84644.1
PFAM: Bacterial protein of unknown function (DUF883).
     
 0.787
AGA86783.1
PFAM: Predicted permease.
   
    0.787
AGA84663.1
PFAM: Acetyltransferase (GNAT) family.
   
    0.734
AGA86858.1
PFAM: Acetyltransferase (GNAT) family.
   
    0.734
AGA86916.1
TIGR01777 family protein; PFAM: NAD dependent epimerase/dehydratase family; Domain of unknown function (DUF1731); TIGRFAM: TIGR01777 family protein.
   
    0.732
AGA87381.1
Hypothetical protein; PFAM: CsbD-like; Belongs to the UPF0337 (CsbD) family.
  
    0.732
arcA
Arginine deiminase; PFAM: Amidinotransferase; TIGRFAM: arginine deiminase.
   
    0.724
AGA88515.1
Putative transcriptional regulator with HTH domain; PFAM: Divergent AAA domain.
  
    0.684
AGA85102.1
HDOD domain-containing protein; PFAM: HDOD domain.
  
     0.662
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.