Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGA84697.1PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein. (674 aa)    
Predicted Functional Partners:
AGA84696.1
Hypothetical protein; PFAM: Domain of unknown function (DUF1850).
 
    0.957
AGA84698.1
PFAM: NMT1/THI5 like; TIGRFAM: TRAP transporter solute receptor, TAXI family.
 
    0.927
AGA84809.1
PFAM: NMT1/THI5 like; TIGRFAM: TRAP transporter solute receptor, TAXI family.
 
    0.859
AGA86651.1
PFAM: NMT1/THI5 like; TIGRFAM: TRAP transporter solute receptor, TAXI family.
 
    0.859
AGA84981.1
Hypothetical protein; PFAM: Tripartite tricarboxylate transporter TctA family.
  
   
 0.511
AGA84983.1
Hypothetical protein; PFAM: Tripartite tricarboxylate transporter family receptor.
  
     0.495
AGA84819.1
Hypothetical protein; PFAM: Tripartite tricarboxylate transporter TctA family.
  
   
 0.421
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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