AGA84726.1 protein (Pseudomonas stutzeri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AGA84726.1

PFAM: Protein of unknown function (DUF1109). (213 aa)

Predicted Functional Partners:

AGA84727.1

0.946

AGA84731.1

0.804

AGA84728.1

0.749

AGA84730.1

0.741

AGA84729.1

0.665

AGA84725.1

0.598

AGA84862.1

0.465

AGA87431.1

0.451

AGA87913.1

0.406

Your Current Organism:

Pseudomonas stutzeri

NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGA84725.1	AGA84726.1	Psest_0112	Psest_0113	Transcriptional regulator; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family; Belongs to the LysR transcriptional regulatory family.	PFAM: Protein of unknown function (DUF1109).	0.598
AGA84725.1	AGA84727.1	Psest_0112	Psest_0114	Transcriptional regulator; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family; Belongs to the LysR transcriptional regulatory family.	RNA polymerase, sigma subunit, ECF family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.	0.598
AGA84725.1	AGA84728.1	Psest_0112	Psest_0115	Transcriptional regulator; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family; Belongs to the LysR transcriptional regulatory family.	PFAM: Predicted integral membrane protein (DUF2282).	0.400
AGA84726.1	AGA84725.1	Psest_0113	Psest_0112	PFAM: Protein of unknown function (DUF1109).	Transcriptional regulator; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family; Belongs to the LysR transcriptional regulatory family.	0.598
AGA84726.1	AGA84727.1	Psest_0113	Psest_0114	PFAM: Protein of unknown function (DUF1109).	RNA polymerase, sigma subunit, ECF family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.	0.946
AGA84726.1	AGA84728.1	Psest_0113	Psest_0115	PFAM: Protein of unknown function (DUF1109).	PFAM: Predicted integral membrane protein (DUF2282).	0.749
AGA84726.1	AGA84729.1	Psest_0113	Psest_0116	PFAM: Protein of unknown function (DUF1109).	PFAM: Protein of unknown function (DUF692).	0.665
AGA84726.1	AGA84730.1	Psest_0113	Psest_0117	PFAM: Protein of unknown function (DUF1109).	Hypothetical protein (DUF2063); PFAM: Uncharacterized protein conserved in bacteria (DUF2063).	0.741
AGA84726.1	AGA84731.1	Psest_0113	Psest_0118	PFAM: Protein of unknown function (DUF1109).	Putative membrane protein; PFAM: DoxX.	0.804
AGA84726.1	AGA84862.1	Psest_0113	Psest_0251	PFAM: Protein of unknown function (DUF1109).	Hypothetical protein.	0.465
AGA84726.1	AGA87431.1	Psest_0113	Psest_2928	PFAM: Protein of unknown function (DUF1109).	Subtilisin-like serine protease; PFAM: Subtilase family.	0.451
AGA84726.1	AGA87913.1	Psest_0113	Psest_3423	PFAM: Protein of unknown function (DUF1109).	Site-specific recombinase XerC; PFAM: Phage integrase family.	0.406
AGA84727.1	AGA84725.1	Psest_0114	Psest_0112	RNA polymerase, sigma subunit, ECF family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.	Transcriptional regulator; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family; Belongs to the LysR transcriptional regulatory family.	0.598
AGA84727.1	AGA84726.1	Psest_0114	Psest_0113	RNA polymerase, sigma subunit, ECF family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.	PFAM: Protein of unknown function (DUF1109).	0.946
AGA84727.1	AGA84728.1	Psest_0114	Psest_0115	RNA polymerase, sigma subunit, ECF family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.	PFAM: Predicted integral membrane protein (DUF2282).	0.613
AGA84727.1	AGA84729.1	Psest_0114	Psest_0116	RNA polymerase, sigma subunit, ECF family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.	PFAM: Protein of unknown function (DUF692).	0.596
AGA84727.1	AGA84730.1	Psest_0114	Psest_0117	RNA polymerase, sigma subunit, ECF family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.	Hypothetical protein (DUF2063); PFAM: Uncharacterized protein conserved in bacteria (DUF2063).	0.639
AGA84727.1	AGA84731.1	Psest_0114	Psest_0118	RNA polymerase, sigma subunit, ECF family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.	Putative membrane protein; PFAM: DoxX.	0.648
AGA84728.1	AGA84725.1	Psest_0115	Psest_0112	PFAM: Predicted integral membrane protein (DUF2282).	Transcriptional regulator; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family; Belongs to the LysR transcriptional regulatory family.	0.400
AGA84728.1	AGA84726.1	Psest_0115	Psest_0113	PFAM: Predicted integral membrane protein (DUF2282).	PFAM: Protein of unknown function (DUF1109).	0.749