Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AGA84730.1Hypothetical protein (DUF2063); PFAM: Uncharacterized protein conserved in bacteria (DUF2063). (263 aa)    
Predicted Functional Partners:
AGA84729.1
PFAM: Protein of unknown function (DUF692).
 
  
 0.996
AGA84731.1
Putative membrane protein; PFAM: DoxX.
 
  
 0.992
AGA84728.1
PFAM: Predicted integral membrane protein (DUF2282).
 
  
 0.985
AGA84726.1
PFAM: Protein of unknown function (DUF1109).
 
   
 0.741
AGA84727.1
RNA polymerase, sigma subunit, ECF family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.639
AGA85636.1
Putative membrane protein; PFAM: DoxX.
  
  
 0.621
AGA85899.1
FHA domain-containing protein; PFAM: FHA domain.
   
    0.462
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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