STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA84798.1Metal-dependent hydrolase; PFAM: Endonuclease/Exonuclease/phosphatase family. (289 aa)    
Predicted Functional Partners:
AGA84799.1
PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
  
    0.896
AGA84797.1
Protein-disulfide isomerase; PFAM: DSBA-like thioredoxin domain.
  
    0.783
AGA86248.1
Selenocysteine lyase; PFAM: Aminotransferase class-V.
  
 
   0.704
AGA84800.1
Negative regulator of beta-lactamase expression; PFAM: Putative peptidoglycan binding domain; N-acetylmuramoyl-L-alanine amidase.
       0.703
AGA88203.1
Cell division protein; PFAM: Sporulation related domain.
  
    0.638
AGA86018.1
Selenocysteine lyase; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurases, SufS subfamily.
    
   0.632
AGA86067.1
Glycine cleavage system regulatory protein.
  
     0.619
AGA87382.1
PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein.
 
  
 0.590
AGA84796.1
PFAM: Cytochrome c; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III.
       0.527
AGA85114.1
Putative membrane-associated protein; PFAM: PAP2 superfamily; SNARE associated Golgi protein.
 
     0.457
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.