Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA84865.1Hypothetical protein. (134 aa)    
Predicted Functional Partners:
AGA87914.1
Putative membrane protein; PFAM: Uncharacterized protein family, UPF0114.
  
     0.648
AGA85431.1
Hypothetical protein; PFAM: DGC domain.
 
     0.647
AGA85430.1
Putative lipid carrier protein; PFAM: SCP-2 sterol transfer family.
 
     0.515
AGA84864.1
Putative hydrolase of the alpha/beta-hydrolase fold protein; PFAM: alpha/beta hydrolase fold.
       0.511
AGA87323.1
Ribosome-associated protein Y (PSrp-1); PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein.
  
     0.488
AGA86507.1
Hypothetical protein.
  
     0.482
AGA86972.1
Hypothetical protein.
  
     0.474
AGA85429.1
Collagenase-like protease; PFAM: Peptidase family U32.
 
     0.470
AGA87288.1
PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein.
  
     0.468
AGA88454.1
PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein.
  
     0.442
Your Current Organism:
Pseudomonas stutzeri
NCBI taxonomy Id: 644801
Other names: P. stutzeri RCH2, Pseudomonas stutzeri RCH2, Pseudomonas stutzeri str. RCH2, Pseudomonas stutzeri strain RCH2
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